one of the youtube channels I watch is MV Freedom. I recall a video fairly recently where Sean was talking about a rain cap he puts over their dry stack while not running to eliminate (or more likely minimize) soot.
Does that sort of thing offset that issue enough?
There are really two different sooting issues, one of which can be mitigated, and the other not.
Probably the nastier sooting issue is when you start an engine and flakes of soot get ejected out of the exhaust. These land on your boat and your neighbor's and are a heck of a mess to clean up. There are two things you can do to significantly reduce this, if not eliminate it.
The first is a rain cap of some sort. When the boat is idle, if rain water drips down the stack, you will get a lot more flakes on start up. A rain cap can be an integrated flapper, or a fancier door-like device. But many people just use an old fender with one end cut off. With a rope loop on the fender and a boat hook, it's pretty easy to place/remove the fender stack cover.
The second mitigation step, typically done in conjunction with a rain cap, is to run the engine hard for 10 minutes or so right near the end of your time underway. This blows out and burns off accumulated soot, leaving less behind to blast out on start up. The combination of these two steps seems to eliminate most start-up soot flakes.
But the other sooting issue is universal, and there is no solution other than periodic cleaning. And that's the haze that accumulates over time in the area around your exhaust. With a dry stack boat it accumulates around the stack, and on a wet exhaust boat is accumulates on the side or transom of the boat. This all varies based on your boats actual configuration. This type of accumulation you will get with any and all diesels.
On my dry stack boat I never had the start-up soot flakes, but I definitely had the haze accumulation on the stack and all the instruments up in that general area. One of the reasons I favor wet exhaust is that it's much easier to clean the side of the boat or the transom than it is to climb the stack and clean all the instruments and stuff up there. Plus, everything you wash off the stack and instruments washes down over the rest of the boat below, so it's always a full boat wash, not just a localized clean up.