The heater coils reduce smoke a bit on startup, but otherwise have no effect on the engine. They time out after a minute or so of electrical activation upon startup. Some owners just disconnect the boot from the heater and don't use it.
Yanmar does prefer you removing the heater plug completely and replacing it with a blank. Yanmar parts has a listing for the blank.
Yanmar otherwise recommends every x hours totally replacing the heating element because once upon a time one broke off and screwed up the engine.
Caveat emptor!
David