Eric, The fact that your boat is not on the scribed line, may not mean that the boat is not on (or at lease near) the lines the designer intended. It is normal to have 3-4 inches of copper showing above the water at the bow, and 2-3 inches at the stern. This prevents biologic growth in the wave slap area. Secondarily, no boat is always perfectly "on her lines." Depending upon fuel and water load, the boat's waterline will change, and the change can be several inches. It would surprise me if you could measure a difference is the swinging motion between full tanks and empty tanks. I have designed and built custom and semi custom boats, back in the day before computers. It is possible to get the boat to float exactly as the designer intended at both full load waterline, and light ship, but it does not always work out that way. I have also built custom boats to other designs, including the personal trawler yacht for a well know designer. At launching, she did not float anywhere near to where the designer expected. That one took quite a bit of trimming ballast to get the trim correct.
Looking at the lines of the Nomad 30, I would guess at full load the water-plane area would require 800-1000 pounds to change the plane one inch. If that guess is approximately correct, then taking 4-500 pounds out of the stern would raise it an inch or so.